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Just use make -f Makefile

Just use make -f Makefile.dist to build LibRaw. You may need to edit Makefile.dist to suit your needs.

./configure script is created by running autoreconf --install
It works fine on my FreeBSD test machine (autoconf 2.69 and automake 1.14), is your autoconf/automake stuff is fresh enough?

-- Alex Tutubalin @LibRaw LLC